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Zuckerkandl Prize Editorial (2004) Journal of Molecular Evolution 58:491-492
The Zuckerkandl Prize is awarded by the Journal of Molecular Evolution to the first author of the paper judged to contain the most significant advance in the field of molecular evolution published in JME each calendar year. Two papers were cited for this award:
Fry BG, Lumsden N, Wüster W, Wickramaratna J, Hodgson WC and. Kini RM. (2003) "Isolation of a neurotoxin (alpha-colubritoxin) from a 'non-venomous' colubrid: evidence for early origin of venom in snakes. Journal of Molecular Evolution 57(4):446-452.
Fry BG, Wuster W, Kini RM., Brusic V, Khan A, Venkataraman D and Rooney AP. (2003) "Molecular evolution of elapid snake venom three finger toxins" Journal of Molecular Evolution 57(1):110-129.

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Fry BG, Vidal N, Norman JA, Vonk FJ, Scheib H, Ramjan R, Kuruppu S, Fung K, Hedges SB, Richardson MK, Hodgson WC, Ignjatovic V, Summerhayes R and Kochva E (2005) “Early evolution of the venom system in lizards and snakes.” Nature doi:10.1038/nature04328 (onliine 17 November 2005).

Amongst extant reptiles only two lineages are known to have evolved venom delivery systems, the advanced snakes and helodermatid lizards (Gila Monster and Beaded Lizard)1. Evolution of the venom system is thought to underlie the impressive radiation of the advanced snakes (2,500 out of 3000 snake species)2,3,4,5. In contrast, the lizard venom system is thought to be restricted to just two species, and to have evolved independently from the snake venom system1. Here we report the presence of venom toxins in two additional lizard lineages (Monitor Lizards and Iguania) and show that all lineages possessing toxin secreting oral glands form a clade, demonstrating a single early origin of the venom systems in lizards and snakes. Construction of gland cDNA libraries and phylogenetic analysis of transcripts revealed that nine toxin types are shared between lizards and snakes. Toxinological analyses of venom components from the Lace Monitor Varanus varius showed potent effects upon blood pressure and clotting ability, bioactivities associated with a rapid loss of consciousness and extensive bleeding in prey. The Iguanian lizard Pogona barbata appears to retain characteristics of the ancestral venom system, i.e. serial, lobular non-compound venom secreting glands on both the upper and lower jaws, whereas the advanced snakes and anguimorph lizards (including Monitor Lizards, Gila Monster and Beaded Lizard) have more derived venom systems characterised by the loss of the mandibular (lower) or maxillary (upper) glands. Demonstration that the snakes, iguanians, and anguimorphs form a single clade provides overwhelming support for a single, early origin of the venom system in lizards and snakes. These results provide new insights into the evolution of the venom system in squamate reptiles and open additional new avenues for biomedical research and drug design using hitherto unexplored venom proteins

 

Pung YF, Kumar SV, Rajagopalan N, Fry BG, Kumar PP, Kini RM (2005) "Ohanin, a novel protein from king cobra venom: Its cDNA and genomic organization" Biochemical Journal (In press).

Ohanin, from king cobra venom, is a novel protein which induces hypolocomotion and hyperalgesia in mice (Pung, Y. F., Wong, P. T. H., Kumar, P. P., Hodgson, W. C., and Kini, R. M. (2005) J Biol Chem. 280, 13137-
13147).
It shows weak homology to PRYSPRY domains (B30.2-like domain). Here we report the complete cDNA and genomic organization of ohanin. There are two mRNA subtypes differing in their 5'-untranslated regions. Interestingly, cDNA sequence does not show sequence similarity to any known sequences, including those of B30.2-like domain-containing proteins. Its full-length cDNA sequence of 1558 bp encodes for prepro-ohanin with a propeptide segment at the C-terminal. This is the first reported snake venom protein with a C-terminal propeptide segment. Ohanin is the first member of a new subfamily of proteins containing B30.2-like domain with short N-terminal segment. We named this subfamily as vespryns. Southern hybridization study shows that ohanin is encoded by a single gene. Its genomic sequence is 7086 bp with five exons
and four introns, and the two types of mRNAs are generated by alternative splicing of exon 2. Our results indicate that ohanin and vespryns may have evolved from the same ancestral gene as B30.2 domain.


Fry, BG (2005) "From genome to 'venome': Molecular origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences and related body proteins." Genome Research 15:403-420.

This study analyzed the origin and evolution of snake venom proteome by means of phylogenetic analysis of the amino acid sequences of the toxins and related nonvenom proteins. The snake toxins were shown to have arisen from recruitment events of genes from within the following protein families: acetylcholinesterase, ADAM (disintegrin/metalloproteinase), AVIT, complement C3, crotasin/ defensin, cystatin, endothelin, factor V, factor X, kallikrein, kunitz-type proteinase inhibitor, LYNX/SLUR, L-amino oxidase, lectin, natriuretic peptide, nerve growth factor, phospholipase A2, SPla/Ryanodine, vascular endothelial growth factor, and whey acidic protein/secretory leukoproteinase inhibitor. Toxin recruitment events were found to have occurred at least 24 times in the evolution of snake venom. Two of these toxin derivations (CRISP and kallikrein toxins) appear to have been actually the result of modifications of existing salivary proteins rather than gene recruitment events. One snake toxin type, the waglerin peptides from Tropidolaemus wagleri (Wagler's Viper), did not have a match with known proteins and may be derived from a uniquely reptilian peptide. All of the snake toxin types still possess the bioactivity of the ancestral proteins in at least some of the toxin isoforms. However, this study revealed that the toxin types, where the ancestral protein was extensively cysteine cross-linked, were the ones that flourished into functionally diverse, novel toxin multigene families.


Li M, Fry BG, Kini RM (2005) "Putting the brakes on snake venom evolution: the unique molecular evolutionary patterns of Aipysurus eydouxii (Marbled sea snake) phospholipase A2 toxins." Molecular Biology and Evolution 22(4):934-941.

Accelerated evolution of toxins is a unique feature of venoms, with the toxins evolving via the birth-and-death mode of molecular evolution. The venoms of sea snakes, however, are remarkably simple in comparison to those of land snakes, which contain highly complex venoms. Aipysurus eydouxii (Marbled sea snake) is a particularly unique sea snake, feeding exclusively upon fish eggs. Secondary to this ecological change, the fangs have been lost and the venom glands greatly atrophied. We recently showed that the only neurotoxin (a three-finger toxin) gene found in the sea snake A. eydouxii has a dinucleotide deletion, resulting in the loss of neurotoxic activity. During these studies, we isolated and identified a number of cDNA clones encoding isozymes of phospholipase A2 (PLA2) toxins from its venom gland. Sixteen unique PLA2 clones were sequenced from the cDNA library and TA cloning of reverse transcription-polymerase chain reaction products. Phylogenetic analysis of these clones revealed that less diversification of the PLA2 toxins has occurred in the A. eydouxii venom gland in comparison to equivalent terrestrial and other marine snakes. As there is no longer a positive selection pressure acting upon the venom, mutations have accumulated in the toxin-coding regions that would have otherwise had a deleterious effect upon the ability to use the venom for prey capture. Such mutations include substitutions of highly conserved residues; in one clone, the active site His48 is replaced by Arg, and in two other clones, highly conserved cysteine residues are replaced. These mutations significantly affect the functional and structural properties of these PLA2 enzymes, respectively. Thus, in A. eydouxii, the loss of the main neurotoxin is accompanied by a much slower rate of molecular evolution of the PLA2 toxins as a consequence of the snake's shift in ecological niche. This is the first case of decelerated evolution of toxins in snake venom.


Ramasamy S, Fry BG, Hodgson WC (2005) "The neurotoxic effects of venoms from seven species of Australasian black snakes (Pseudechis): efficacy of CSL black and CSL tiger snake antivenoms" Clin Exp Pharmacol and Physiol 32(1-2):7-12.

1. Pseudechis species (black snakes) are among the most widespread venomous snakes in Australia. Despite this, very little is known about the potency of their venoms or the efficacy of the antivenoms used to treat systemic envenomation by these snakes. The present study investigated the in vitro neurotoxicity of venoms from seven Australasian Pseudechis species and determined the efficacy of black and tiger snake antivenoms against this activity. 2. All venoms (10 g/mL) significantly inhibited indirect twitches of the chick biventer cervicis nerve­muscle preparation and responses to exogenous acetylcholine (ACh; 1 mmol/L), but not to KCl (40 mmol/L), indicating activity at post-synaptic nicotinic receptors on the skeletal muscle. 3. Prior administration of either black or tiger snake antivenom (5 U/mL) prevented the inhibitory effects of all Pseudechis venoms. 4. Black snake antivenom (5 U/mL) added at t 90 (i.e. the time-point at which the original twitch height was reduced by 90%) significantly reversed the effects of P. butleri (28 +/- 5%), P. guttatus (25 +/- 8%) and P. porphyriacus (28 +/- 10%) venoms. Tiger snake antivenom (5 U/mL) added at the t 90 time-point significantly reversed the neurotoxic effects of P. guttatus (51 +/- 4%), P. papuanus (47 +/- 5%) and P. porphyriacus (20 +/- 7%) venoms. 5. We show, for the first time, the presence of neurotoxins in the venom of these related snake species and that this activity is differentially affected by either black snake or tiger snake antivenoms.


Li M, Fry BG, Kini RM (2005) "Eggs only diet: the shift in preferred prey by the Marbled sea snake (Aipysurus eydouxii) resulting in a loss of postsynaptic neurotoxicity." Journal of Molecular Evolution 60(1):81-9.

Studies so far have correlated the variation in the composition of snake venoms with the target prey population and snakeÅfs diet. Here we present the first example of an alternative evolutionary link between venom composition and dietary adaptation of snakes. We describe a dinucleotide deletion in the only three finger toxin gene expressed in the sea snake Aipysurus eydouxii (Marbled Sea Snake) venom and how it may have been the result of a significant change in dietary habits. The deletion leads to a frame shift and truncation with an accompanying loss of neurotoxicity. Due to the remarkable streamlining of sea snake venoms, a mutation of a single toxin can have dramatic effects on the whole venom, in this case likely explaining the 50- to 100-fold decrease in venom toxicity in comparison to that of other species in the same genus. This is a secondary result of the adaptation of A. eydouxii to a new dietary habit Å\ feeding exclusively on fish eggs and, thus, the snake no longer using its venom for prey capture. This was parallel to greatly atrophied venom glands and loss of effective fangs. It is interesting to note that a potent venom was not maintained for use in defense, thus reinforcing that the primary use of snake venom is for prey capture.


Lumsden NG, Fry BG, Ventura S, Kini RM, Hodgson WC. (2005) "Pharmacological characterisation of a neurotoxin from the venom of Boiga dendrophila (Mangrove snake)." Toxicon 45(3):329-334.

In this study, we have pharmacologically characterised boigatoxin-A, a three finger toxin isolated from the venom of the colubrid, Boiga dendrophila (Mangrove catsnake). In the chick biventer cervicis nerve-muscle preparation boigatoxin-A (1 mM) displayed poorly reversible postsynaptic blockade as evidenced by the inhibition of indirect (0.1 Hz, 0.2 ms, supramaximal V) twitches and responses to exogenous acetylcholine (1 mM) and carbachol (20 mM). Boigatoxin-A (0.3­ 0.5 mM) caused a concentration-dependent depression of the maximum response of cumulative concentration response curves to CCh (0.6­80 mM). Boigatoxin-A (1 mM) induced readily reversible inhibition of electrically evoked (0.2 Hz, 0.3 ms, 70­ 100 V) twitches of the prostatic segment of the rat vas deferens. This inhibition was not significantly attenuated by 8- phenyltheophylline (20 mM) or idazoxan (1 mM). Boigatoxin-A (1 mM) did not affect a,b-mATP (10 mM) or noradrenaline (25 mM) responses in unstimulated epididymal segments of the rat vas deferens. Our data suggests that this toxin has weak postsynaptic neurotoxicity in skeletal muscle and also prejunctional neurotoxic activity in the smooth muscle of the rat vas deferens to inhibit the release of neurotransmitter(s), but not via prejunctional purinergic or adrenergic receptors. This is the first report of such activity for a toxin isolated from snake venom and reinforces the largely untapped potential of colubrid venoms.


Kuruppu S., Fry BG, Hodgson WC (2005) "Presynaptic neuromuscular activity of venom from the Brown-Headed Snake (Glyphodon tristis)" Toxicon 45(3):383-388.

The brown-headed snake (Glyphodon tristis) inhabits the forest regions of Papua New Guinea, Torres Strait Islands, and far northern Queensland, Australia. Although bites by Glyphodon dunmalli have been reported, G. tristis was regarded as innocuous until 1989 when a healthy 20 year old man was bitten (Sutherland, S.K., Tibballs, J., 2001. Australian Animal Toxins, the Creatures, their Toxins and Care of the Poisoned Patient. University Press, Oxford). Treatment of envenomation by this species is empirical with no specific antivenom available. While no published studies on the venom of G. tristis are available, unpublished studies suggest neurotoxicity as being the main symptom of envenomation. In this study, the in vitro effects of G. tristis venom were examined using the chick biventer cervicis nerve muscle (CBCNM) preparation. Venom (10 mg/ml) inhibited indirect (0.2 ms, 0.1 Hz, supramaximal V) twitches of the CBCNM. This inhibition appeared to be presynaptic in origin as evidenced by the lack of effect of venom on responses to exogenous acetylcholine (1 mM), carbacho (20 mM) and KCl (40 mM) in the non-stimulated CBCNM. Prior addition (10 min) of polyvalent snake antivenom (5 U/ml; CSL Ltd) attenuated twitch inhibition. The venom (10­50 mg/ml) also appears to be myotoxic as indicated by a slowly developing contracture and inhibition of direct (2 ms, 0.1 Hz, supramaximal V, in the presence of tubocurarine 10 mM) twitches. Myotoxicity was confirmed by subsequent histological examination of tissues. This myotoxicity was prevented by the prior addition of polyvalent snake antivenom (30 U/ml). The phospholipase A inhibitor 4-BPB (1.8 mM) significantly attenuated the inhibition of indirect and direct twitches of the CBCNM preparation, indicating the involvement of a PLA2 component in the toxic action of the venom.

 

Fry BG, Wickramaratana J, Lemme S, Beuve A, Garbers D, HodgsonWC and Alewood P “Novel natriuretic peptides from the venom of the inland taipan (Oxyuranusmicrolepidotus): Isolation, chemical and biological characterization” Biochemical and Biophysical Research Communications 327:1011-1015.

Three natriuretic-like peptides (TNP-a, TNP-b, and TNP-c) were isolated from the venom of Oxyuranus microlepidotus (inland taipan) and were also present in the venoms of Oxyuranus scutellatus canni (New Guinea taipan) and Oxyuranus scutellatus scutellatus (coastal taipan). They were isolated by HPLC, characterised by mass spectrometry and Edman analysis, and consist of 35–39 amino acid residues. These molecules differ from ANP/BNP through replacement of invariant residues within the 17-membered ring structure and by inclusion of proline residues in the C-terminal tail. TNP-c was equipotent to ANP in specific GC-A assays or aortic ring assays whereas TNP-a and TNP-b were either inactive (GC-A over-expressing cells and endothelium-denuded aortic rings) or weakly active (endothelium-intact aortic rings). TNP-a and TNP-b were also unable to competitively inhibit the binding of TNP-c in endothelium-denuded aortae (GC-A) or endothelium-intact aortae (NPR-C). Thus, these naturally occurring isoforms provide a new platform for further investigation of structure–function relationships of natriuretic peptides.

Lumsden NG, Fry BG, Ventura S, Kini RM and Hodgson WC (2005) "The in vitro and in vivo pharmacological activity of Boiga dendrophila (Mangrove catsnake) venom." Autonomic & Autacoid Pharmacology 24:107-113,

Summary
1. The great taxonomic and prey base diversity of colubrids (non-front-fanged snakes) suggests that their venoms may represent a literal gold mine for scientists eager to find novel pharmacological probes.
2. While pharmacological characterization is lacking for most of these venoms, this is even more so with regard to activity of colubrid venoms on the mammalian autonomic nervous system. This study characterizes the activity of venom from the colubrid, Boiga dendrophila using in vitro smooth muscle preparations and the anaesthetized rat.
3. In the prostatic segment of the rat vas deferens, cumulative additions of venom (1–150 lg ml)1) induced concentration-dependent inhibition of electrically evoked (0.2 Hz, 0.3 ms, 70–100 V) twitches. The inhibitory effect of venom (100 lg ml)1) was attenuated by 8-phenyltheophylline (8-PT) (20 lM) and 8-cyclopentyl-1, 3-dipropylxanthine (20 lM) but not idazoxan (1 lM), or a combination of ranitidine (0.2 lM) and thioperamide (10 lM). The inhibitory effect of venom (100 lg ml)1) was augmented by dipyridamole (10 lM) but abolished by pretreatment with adenosine deaminase (7.5 units/100 ll) suggesting that it contains components with adenosine A1 receptor activity, most likely adenosine.
4. In isolated segments of guinea-pig ileum, venom (10–100 lg ml)1) caused concentration dependent contractions which were inhibited by the muscarinic receptor antagonist atropine (0.1 lM) but not by the histamine receptor antagonist mepyramine (0.5 lM).
5. In the anaesthetized rat, venom (5–7.5 mg kg)1, i.v.) caused a hypotensive effect.
6. Our data suggest that the venom contains components with purinergic and muscarinic receptor activity.

 

Lumsden NG, Fry BG, Kini RM and Hodgson WC (2004) "In vitro neuromuscular activity of 'colubrid' snake venoms: clinical and evolutionary implications." Toxicon 43(7):819-827.
In this study, venoms from species in the Colubrinae, Homalopsinae, Natricinae, Pseudoxyrhophiinae and Psammophiinae snake families were assayed for activity in the chick biventer cervicis skeletal nerve muscle preparation. Boiga dendrophila, Boiga cynodon, Boiga dendrophila gemincincta, Boiga drapiezii, Boiga irregularis, Boiga nigriceps and Telescopus dhara venoms (10 mg/ml) displayed postsynaptic neuromuscular activity as evidenced by inhibition of indirect (0.1 Hz, 0.2 ms, supramaximal V) twitches. Neostigmine (5 mM) reversed the inhibition caused by B. cynodon venom (10 mg/ml) while the inhibitory effects of Psammophis mossambicus venom (10 mg/ml) spontaneously reversed, indicating a reversible mode of action for both venoms. Trimorphodon biscutatus (10 mg/ml) displayed irreversible presynaptic neurotoxic activity. Detectable levels of phospholipase A2 activity were found only in T. biscutatus, T. dhara and P. mossambicus venoms. The results demonstrate a hitherto unsuspected diversity of pharmacological actions in all lineages which may have implications ranging from clinical management of envenomings to venom evolution.


Chetty N, Du A, Hodgson WC, Winkel K and Fry BG (2004) "A pharmacological examination of Indo-Pacific sea-snake venoms: efficacy of antivenom." Toxicon 44(2):193-200
We examined the neurotoxicity of the following sea snake venoms: Enhydrina schistosa (geographical variants from Weipa and Malaysia), Lapemis curtus (Weipa and Malaysia), Laticauda colubrina, Aipysurus laevis, A. fuscus and A. foliosquamatus. Venom from a terrestrial snake, Notechis scutatus (tiger snake), was used as a reference. All venoms (1 & 3 mg/ml) abolished indirect twitches of the chick biventer cervicis muscle and significantly inhibited responses to ACh (1 mM) and CCh (20 mM), but not KCl (40mM), indicating the presence of post-synaptic toxins. Prior administration (10 min) of beaked sea snake antivenom (1 unit/ml) attenuated the twitch blockade produced by N. scutatus venom and all sea snake venoms (1 mg/ml). Prior administration (10 min) of tiger snake antivenom (1 unit/ml) attenuated the twitch blockade of all venoms except those produced E. schistosa (Malaysia and Weipa) and A. foliosquamatus. Administration of beaked sea snake antivenom (1 unit/ml) at t90 (ie. time at which 90% inhibition of initial twitch height occurred) reversed the inhibition of twitches (20-50%) produced by the sea snakes venoms (1 mg/ml) but not by N. scutatus venom (1 mg/ml). Tiger snake antivenom (1 unit/ml) administered at t90, produced only minor reversal (ie. 15-25%) of the twitch blockade caused by L. curtus (Weipa), A. foliosquamatus, L. colubrina and A. laevis venoms (1 mg/ml). Differences in the rate of reversal of the neurotoxicity produced by the two geographical variants of E. schistosa venom, after addition of beaked sea snake antivenom, indicate possible differences in venom components. This study shows that sea snake venoms contain potent postsynaptic activity that, despited the significant genetic distances between the lineages, can be neutralised with the monovalent beaked sea snake antivenom. However, the effects of tiger snake antivenom are more variable.

Wickramaratna J, Fry BG, Loiacono RE, Aguilar MI and Hodgson WC (2004) "Isolation and characterization at cholinergic nicotinic receptors of a neurotoxin from the venom of the Acanthophis sp. seram death adder." Biochemical Pharmacology 68:383-394.
The present study describes the isolation of the first neurotoxin (acantoxin IVa) from Acanthophis sp. Seram death adder venom and an examination of its activity at nicotinic acetylcholine receptor (nAChR) subtypes. Acantoxin IVa (MW 6815; 0.1­1.0 mM) caused concentration-dependent inhibition of indirect twitches (0.1 Hz, 0.2 ms, supramaximal V) and inhibited contractile responses to exogenous nicotinic agonists in the chick biventer cervicis nerve-muscle, confirming that this toxin is a postsynaptic neurotoxin. Acantoxin IVa (1­10 nM) caused pseudo-irreversible antagonism at skeletal muscle nAChR with an estimated pA2 of 8:36 0:17. Acantoxin IVa was approximately two-fold less potent than the long-chain (Type II) neurotoxin, a-bungarotoxin.With a pKi value of 4.48, acantoxin IVa was approximately 25,000 times less potent than a-bungarotoxin at a7-type neuronal nAChR. However, in contrast to a-bungarotoxin, acantoxin IVa completely inhibited specific [3H]-methyllycaconitine (MLA) binding in rat hippocampus homogenate. Acantoxin IVa had no activity at ganglionic nAChR, a4b2 subtype neuronal nAChR or cytisine-resistant [3H]-epibatidine binding sites. While long-chain neurotoxin resistant [3H]-MLA binding in hippocampus homogenate requires further investigation, we have shown that a short-chain (Type I) neurotoxin is capable of fully inhibiting specific [3H]-MLA binding.


Fry BG and Wüster W (2004) "Assembling an arsenal: Origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences". Molecular Biology and Evolution 21(5): 870-883.
We analyzed the origin and evolution of snake venom toxin families represented in both viperid and elapid snakes by means of phylogenetic analysis of the amino acid sequences of the toxins and related non-venom proteins. Out of eight toxin families analyzed, five provided clear evidence of recruitment into the snake venom proteome prior to the diversification of the advanced snakes (Kunitz-type protease inhibitors, CRISP toxins, galactose binding lectins, M12B peptidases, nerve growth factor toxins), and one was equivocal (cystatin toxins). In two others (phospholipase A2 and natriuretic toxins), the non-monophyly of venom toxins demonstrates that presence of these proteins in elapids and viperids results from independent recruitment events. The ANP/BNP natriuretic toxins are likely to be basal while the CNP/BPP toxins are Viperidae only. Similarly, the lectins were recruited twice. In contrast to the basal recruitment of the galactose binding lectins, the C-type lectins were shown to be Viperidae only, with the alpha- and beta-chains resulting from an early duplication event. These results provide strong additional evidence that venom evolved once, at the base of the advanced snake radiation, rather than evolving multiple times in different lineages, with these toxins also present in the venoms of the 'colubrid' snake families. Moreover, they provide a first insight into the composition of the earliest ophidian venoms, and point the way towards a research program that could elucidate the functional context of the evolution of the snake venom proteome.

Fry BG, Wüster W, Ramjan SFR, Jackson T, Martelli P and Kini RM. (2003) "LC/MS (liquid chromatography, mass spectrometry) analysis of Colubroidea snake venoms: evolutionary and toxinological implications." Rapid Communications in Mass Spectrometry 17: 2047-2062.
The evolution of the venomous function of snakes and the diversification of the toxins has been of tremendous research interest and considerable debate. It has become recently evident that the evolution of the toxins in the advanced snakes (Colubroidea) predated the evolution of the advanced, front-fanged delivery mechanisms. Historically, the venoms of snakes lacking front-fanged venom delivery systems (conventionally grouped into the paraphyletic family Colubridae) have been largely neglected. In this study we used LC/MS (liquid chromatography with mass spectrometry) to analyze a large number of venoms from a wide array of species representing the major advanced snake clades Atractaspididae, Colubrinae, Elapidae, Homalopsinae, Natricinae, Psammophiinae, Pseudoxyrhophiinae, Xenodontinae, and Viperidae. We also present the first sequences of toxins from Azemiops feae as well as additional toxin sequences from the Colubrinae. The large body of data on molecular masses and retention times thus assembled demonstrates a hitherto unsuspected diversity of toxins in all lineages, having implications ranging from clinical management of envenomings to venom evolution to the use of isolated toxins as leads for drug design and development. Although definitive assignment of a toxin to a protein family can only be done through demonstrated structural studies such as N-terminal sequencing, the molecular mass data complemented by LC retention information, presented here, do permit formulation of reasonable hypotheses concerning snake venom evolution and potential clinical effects to a degree not possible till now. The data will also be useful in biodiscovery.

Fry BG, Lumsden N, Wüster W, Wickramaratna J, HodgsonWC and. Kini RM. (2003) "Isolation of a neurotoxin (alpha-colubritoxin) from a 'non-venomous' colubrid: evidence for early origin of venom in snakes. Journal of Molecular Evolution 57(4):446-452
The evolution of venom in advanced snakes has been a focus of long-standing interest. Here we provide the first complete amino acid sequence of a colubrid toxin, which we have called '_-colubritoxin', isolated from the Asian ratsnake Coelognathus radiatus (formerly known as Elaphe radiata), an archetypal non-venomous snake as sold in pet stores. This potent postsynaptic neurotoxin displays readily reversible, competitive antagonism at the nicotinic receptor. The toxin is homologous with, and phylogenetically rooted within, the three-finger toxins, previously thought unique to elapids, suggesting that this toxin family was recruited into the chemical arsenal of advanced snakes early in their evolutionary history. LC-MS analysis of venoms from most other advanced snake lineages revealed the widespread presence of components of the same molecular weight class, suggesting the ubiquity of three-finger toxins across advanced snakes, with the exclusion of Viperidae. These results support the role of venom as a key evolutionary innovation in the early diversification of advanced snakes and provide evidence that forces a fundamental rethink of the very concept of non-venomous snake.

Fry BG, Wuster W, Kini RM., Brusic V, Khan A, Venkataraman D and Rooney AP. (2003) "Molecular evolution of elapid snake venom three finger toxins" Journal of Molecular Evolution 57(1):110-129.
Animal venom components are of considerable interest to researchers across a wide variety of disciplines, including molecular biology, biochemistry, medicine and evolutionary genetics. The three-finger family of snake venom peptides is a particularly interesting and biochemically complex group of venom peptides, because they are encoded by a large multigene family and display a diverse array of functional activities. In addition, understanding how this complex and highly varied multigene family evolved is an interesting question to researchers investigating the biochemical diversity of these peptides and their impact on human health. Therefore, the purpose of our study was to investigate the long-term evolutionary patterns exhibited by these snake venom toxins in order to understand the mechanisms by which they diversified into a large, biochemically diverse, multigene family. Our results show a much greater diversity of family members than what was previously known, including a number of subfamilies that did not fall within any previously identified groups with characterised activities. In addition, we found that the long-term evolutionary processes that gave rise to the diversity of three-finger toxins are consistent with the birth-and-death model of multigene family evolution. It is anticipated that this 'Three Finger Toxin Toolkit' will prove to be useful in providing a clearer picture of the diversity of investigational ligands or potential therapeutics available within this important family.

Wickramaratna JC, Fry BG and Hodgson WC. (2003) "Species dependent variations in the in vitro myotoxicity of death adder (Acanthophis) venoms." Toxicological Science. 74(2): 352-360.
Based on early studies on Acanthophis antarcticus (common death adder) venom it has long been thought that death adder snake venoms are devoid of myotoxicity. However, a recent clinical study reported rhabdomyolysis in patients following death adder envenomations, in Papua New Guinea, by a species thought to be different to A. antarcticus. Subsequently, a myotoxic phospholipase A2 component was isolated from A. rugosus (Irian Jayan death adder) venom. The present study examined the venoms of A. praelongus (northern), A. pyrrhus (desert), A. hawkei (Barkly Tableland), A. wellsi (black head), A. rugosus, A. sp. Seram and the regional variants of A. antarcticus for in vitro myotoxicity. Venoms (10-50 mg/ml) were examined for myotoxicity using the chick directly (0.1Hz, 2ms, supramaximal V) stimulated biventer cervicis nerve-muscle preparation. A significant contracture of skeletal muscle and/or inhibition of direct twitches were considered signs of myotoxicity. This was confirmed by histological examination. All venoms displayed high phospholipase A2 activity. The venoms (10-50 mg/ml) of A. sp. Seram, A. praelongus, A. rugosus and A. wellsi caused a significant inhibition of direct twitches and an increase in baseline tension compared to the vehicle (n = 4-6; two-way ANOVA, p < 0.05). Furthermore, these venoms caused dose-dependent morphological changes in skeletal muscle. In contrast, the venoms (10-50 mg/ml; n = 3-6) of A. hawkei, A. pyrrhus and regional variants of A. antarcticus were devoid of myotoxicity. Prior incubation (10 min) of CSL death adder antivenom (5 units/ml) prevented the myotoxicity caused by A. sp. Seram, A. praelongus, A. rugosus and A. wellsi venoms (50 mg/ml; n = 4-7). In conclusion, clinicians may need to be mindful of possible myotoxicity following envenomations by A. praelongus, A. rugosus, A. sp. Seram and A. wellsi species.

Fry BG, Wickramaratna JC, Hodgson WC, Winkel K, and Wuster W. (2003) "Effectiveness of snake antivenom: species and regional venom variation and its clinical impact" Journal of Toxicology-Toxin Reviews. 22, No. 1, pp. 23­34,
The ubiquity of venom variation in snakes poses special problems for the manufacture of antivenom and has undermined the commercial attractiveness of this class of therapeutic agent. In particular, it has been amply documented that both interspecific and intraspecific variation in venom composition can affect the neutralisation capacity of antivenoms. This may be exacerbated by the selective use of tests of venom toxicity and antivenom efficacy, such as the lethal dose and ED50, resulting in inadequate neutralisation of time, rather than dose, dependent toxins, particularly enzymes involved in defibrinogenating, haemorrhagic and necrotising venom activities. The clinical consequences can be reduced efficacy against some important venom activities or even complete treatment failure in critical envenomations. All these factors, combined with the ongoing reduction in the number of antivenom manufacturers world-wide, and concomitant contraction in the range of available antivenoms, present significant challenges for the treatment of snakebite in the 21st century.

Hodgson WC, Eriksson CO, Alewood PF and Fry BG. (2003) A comparison of the in vitro neuromuscular activity of venom from three Australian snakes, Hoplocephalus stephensi, Austrelaps superbus and Notechis scutatus: efficacy of tiger snake antivenom. Clinical and Experimental Pharmacology and Physiology
.30(3):127-132.

Tiger snake antivenom, raised against Notechis scutatus venom, is indicated not only for the treatment of envenomation by this snake but also that of the copperhead (Austrelaps superbus) and Stephen's banded snake (Hoplocephalus stephensi). This study compared the neuromuscular pharmacology of venom from these snakes and the in vitro efficacy of tiger snake antivenom. In the chick biventer cervicis muscle and mouse phrenic nerve diaphragm preparations, all venoms (3-10 _g/ml) produced inhibition of indirect twitches. In the biventer muscle, venoms (10 _g/ml) inhibited responses to ACh (1 mM) and carbachol (20 mM), but not KCl (40 mM). The prior (10 min) administration of 1 unit/ml antivenom markedly attenuated the neurotoxic effects of A. superbus and N. scutatus venoms (10 _g/ml) but was less effective against H. stephensi venom (10 _g/ml). While 5 units/ml antivenom attenuated the neurotoxic activity of all venoms. Administration of 5 units/ml antivenom at t90 partially reversed, over a period of 3 hours, the inhibition of twitches produced by N. scutatus (10 _g/ml, 41 % recovery), A. superbus (10 _g/ml, 25 % recovery) and H. stephensi (10 _g/ml, 50 % recovery) venoms. All venoms (10-100 _g/ml) also displayed signs of in vitro myotoxicity. The results of this study indicate that all three venoms contain neurotoxic activity which is effectively attenuated by tiger snake antivenom.

Wickramaratna JC, Fry BG, Aguilar MI, Kini RM and Hodgson WC (2003) "Isolation and pharmacological characterisation of a phospholipase A2 myotoxin from the venom of the Irian Jayan death adder (Acanthophis rugosus)" British Journal of Pharmacology 138, 333 ­ 342
It has long been thought that death adder venoms are devoid of myotoxic activity based on studies done only on Acanthophis antarcticus (Common death adder) venom. However, a recent clinical study reported rhabdomyolysis in patients following death adder envenomations, in Papua New Guinea, by a species thought to be different to A. antarcticus (Lalloo et al., 1996: QJM, 89, 25-35). Consequently, the present study examined A. rugosus (Irian Jayan death adder) venom for myotoxicity, and isolated the first myotoxin (acanmyotoxin-1) from a death adder venom. A. rugosus (10-50 mg/ml) and acanmyotoxin-1 (MW 13811; 0.1 ­ 1 mM) were screened for myotoxicity using the chick directly (0.1Hz, 2ms, supramaximal V) stimulated biventer cervicis nerve-muscle (CBCNM) preparation. A significant contracture of skeletal muscle and/or inhibition of direct twitches were considered signs of myotoxicity. This was confirmed by histological examination. High phospholipase (PL) A2 activity was detected in both A. rugosus venom (140.2 ± 10.4 mmol/min/mg; n=6) and acanmyotoxin-1 (153.4 ± 11 mmol/min/mg; n=6). Both A. rugosus venom (10-50 mg/ml) and acanmyotoxin-1 (0.1 ­ 1 mM) caused dose-dependent inhibition of direct twitches and increase in baseline tension (n=4-6). In addition, dose-dependent morphological changes in skeletal muscle were observed. Prior incubation (10 min) of CSL death adder antivenom (5 units/ml; n=4) or inactivation of PLA2 activity with 4-bromophenacyl bromide (1.8 mM; n=4) prevented the myotoxicity caused by acanmyotoxin-1 (1 m M). Acanmyotoxin-1 (0.1 mM; n=4) displayed no significant neurotoxicity when it was examined using the indirectly (0.1Hz, 0.2ms, supramaximal V) stimulated CBCNM preparation. In conclusion, the myotoxic effects of A. rugosus venom may be of important clinical relevance given the use of anticholinesterases to reduce the amount of death adder antivenom required to treat systemic envenomation.

Fry BG, Wickramaratna JC, Hodgson WC, Alewood PF,Kini RM, Ho H and Wuster W. (2002) "Electrospray liquid chromatography/mass spectrometry fingerprinting of Acanthophis (death adder) venoms: taxonomic and toxinological implications" Rapid Communications in Mass Spectrometry 16:600-608.
Death adders (genus Acanthophis) are unique among elapid snakes in both morphology and venom composition. Despite this genus being among the most divergent of all elapids, the venom has been historically regarded as relatively quite simple. In this study, LC-MS analysis has revealed a much greater diversity in venom composition, including the presence of molecules of novel molecular weights which may represent a new class of venom component. Furthermore, there exists significant variation between species and populations, which allow for the LC-MS fingerprinting of each species. Mass profiling of Acanthophis venoms clearly demonstrates the effectiveness of this technique which underpins fundamental studies ranging from chemotaxonomy to drug design.

Winkel KD, Fry BG, Hawdon GM and Carroll T. (2001) "Black snake, brown snake or mistake? A cautionary tale." Australian Family Physician. 2001 30(9):832.
The snake venom detection kit (SVDK), manufactured by CSL Limited and first introduced in 19791, has made a unique and valuable contribution to snake bite management in Australia by facilitating the choice of the correct monovalent antivenom when indicated. However, despite its robustness 'in the field' the SVDK has limitations that should always be borne in mind when interpreting the assay results2. We present a case that reinforces those limitations and provides important lessons for clinical practice.

Fry BG, Wickramaratna JC, Jones A, Alewood P, and Hodgson WC (2001) "Species and regional variations in the effectiveness of antivenom against the in vitro neurotoxicity of death adder (Acanthophis) venoms." Toxicology and Applied Pharmacology 175, 140­148.
Although viper-like in appearance and habit, death adders belong to the Elapidae family of snakes. Systemic envenomation represents a serious medical problem with antivenom, which is raised against Acanthophis antarcticus venom, representing the primary treatment. This study focused upon the major Acanthophis variants from Australia and islands in the Indo-Pacific region. Venoms were profiled using liquid chromatography - mass spectrometry, and analysed for in vitro neurotoxicity (0.3­10 mg/ml), as well as the effectiveness of antivenom (1-5 units/ml; 10 min prior to the addition of 10 mg/ml venom). The following death adder venoms were examined: A. antarcticus (from separate populations in New South Wales, Queensland, South Australia & Western Australia), A. hawkei, A. praelongus, A. pyrrhus, A. rugosus, A. wellsi and venom from an unnamed species from the Indonesian island of Seram. All venoms abolished indirect twitches of the chick isolated biventer cervicis nerve-muscle preparation in a dose dependent manner. In addition, all venoms blocked responses to exogenous acetylcholine (1 mM) and carbachol (20 mM), but not KCl (40 mM), suggesting postsynaptic neurotoxicity. Death adder antivenom (1 unit/ml) prevented the neurotoxic effects of A. pyrrhus, A. praelongus and A. hawkei venoms, however, was markedly less effective against venoms from A. antarcticus (NSW; SA; WA), A. rugosus, A. wellsi and A. sp. Seram. However at 5 units/ml, antivenom was effective against all venoms tested. Death adder venoms, including those from A. antarcticus geographic variants, differed not in only in their venom composition, but also in their neurotoxic activity and susceptibility to antivenom. For the first time toxicological aspects of A. hawkei, A. wellsi, A. rugosus and A. sp. Seram venoms were studied.

Fry BG (1999) "Structure-function properties of venom from Australian elapids." Toxicon 37(1):11-32.
A comprehensive review of venom components isolated thus far from Australian elapids. Illustrated is that a tremendous structural homology exists among the components but this homology is not representative of the functional diversity. Further, the review illuminates the overlooked species and areas of research.

 

 

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